A comprehensive and customizable R package for microbiome analysis.
This is an initiative to help understand Statistical methods and Machine learning in a naive manner. You will find scripts, and theoretical contents required to clarify concepts, especially for bio-informatic students.
End-to-end metagenomics pipeline for 16S rRNA sequencing data, ecological Alpha/Beta diversity calculations (QIIME2/phyloseq), 3D PCoA projections, and dysbiosis profiling.
code to reproduce AIH results
Package for automation of statistics that are widely used in metabolomics.
Microbiome Diversity Analysis Pipeline — alpha/beta diversity + top-N composition in one command
R functions
Unsupervised learning of human microbiome community structure using HMPv13 dataset; PCoA, hierarchical clustering, and purity evaluation in R
A complete SSR population genetics toolkit for any species. Includes data cleaning, UPGMA clustering, PCoA, STRUCTURE formatting, STRUCTURE barplot visualization, and supporting scripts for reproducible microsatellite population analyses.
Fast PCoA based on randomized SVD
Add a description, image, and links to the pcoa topic page so that developers can more easily learn about it.
To associate your repository with the pcoa topic, visit your repo's landing page and select "manage topics."