Python Package for the downstream analysis of mass-spectrometry-based proteomics data
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Nov 21, 2025 - Jupyter Notebook
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dia-nn
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This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
fasta proteomics dia dda metabolomics mass-spectrometry contamination mitochondrion neurodegeneration dia-nn lysosome keratin spectronaut trypsin streptavidin bioanalytical-chemistry protein-contaminant
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Jul 3, 2026
Nextflow workflow for performing DIA proteomics
workflow bioinformatics nextflow proteomics dia encyclopedia qc skyline nextflow-pipeline dia-nn proteowizard
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Sep 2, 2026 - Nextflow
R package and Shiny app for the dowstream analysis of quantitative proteomic data
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Jul 30, 2026 - R
DIA LC-MS data analysis tool for AMR detection
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Feb 15, 2023 - R
Reproducible DIA-NN proteomics post-processing and QC workflow with Python, Snakemake, SLURM, and CI.
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Aug 24, 2026 - Python
A Nextflow pipeline for analyzing DIA immunopeptidomics data using DIA-NN
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Jun 1, 2026 - Nextflow
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