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SysBioChalmers
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raven-toolbox
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feat(ftinit): opt-in deterministic extraction (strict gap + canonical optimum)
CI
#178:
Pull request
#85
synchronize by
edkerk
2m 21s
feat/ftinit-deterministic-extraction
feat/ftinit-deterministic-extraction
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feat(ftinit): opt-in deterministic extraction (strict gap + canonical optimum)
CI
#177:
Pull request
#85
opened by
edkerk
1m 51s
feat/ftinit-deterministic-extraction
feat/ftinit-deterministic-extraction
1m 51s
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Refresh multi-organism validation on the deterministic placement (stacks on #83)
CI
#176:
Pull request
#84
opened by
edkerk
1m 58s
feat/multiorg-remeasure
feat/multiorg-remeasure
1m 58s
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Deterministic, score-aligned reaction placement (fixes 52.8% agreement regression)
CI
#175:
Pull request
#83
opened by
edkerk
2m 17s
feat/placement-tiebreak
feat/placement-tiebreak
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assign_compartments gap-fill: reliable flux-based fill, not cobra's MILP
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#174:
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#82
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feat/flux-based-gapfill
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assign_compartments gap-fill: reliable flux-based fill, not cobra's MILP
CI
#173:
Pull request
#82
opened by
edkerk
2m 6s
feat/flux-based-gapfill
feat/flux-based-gapfill
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Cross-model validation of the confidence facet bands
CI
#172:
Pull request
#81
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feat/confidence-multimodel-validation
feat/confidence-multimodel-validation
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Cross-model validation of the confidence facet bands
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#171:
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Cross-model validation of the confidence facet bands
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Thiele-Palsson score mapping + verified ECO ids
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#169:
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feat/confidence-thiele-palsson
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Cross-model validation of the confidence facet bands
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#168:
Pull request
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1m 47s
feat/confidence-multimodel-validation
feat/confidence-multimodel-validation
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Wire the confidence facets together
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#167:
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feat/confidence-wire-facets
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Fix load_delta_g_csv stamping the ΔG missing-value sentinel as a real value
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#166:
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fix/delta-g-missing-sentinel
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Thiele-Palsson score mapping + verified ECO ids
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#165:
Pull request
#80
opened by
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2m 19s
feat/confidence-thiele-palsson
feat/confidence-thiele-palsson
2m 19s
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Wire the confidence facets together
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#164:
Pull request
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1m 49s
feat/confidence-facet-wiring
feat/confidence-facet-wiring
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Wire the confidence facets together
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#163:
Pull request
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opened by
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2m 3s
feat/confidence-wire-facets
feat/confidence-wire-facets
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Compare grRules as logic in diff_models (order-insensitive)
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#162:
Pull request
#74
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1m 48s
docs/diffmodels-gpr-backport
docs/diffmodels-gpr-backport
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KEGG FASTA/HMM reconstruction: align model output with MATLAB RAVEN
CI
#161:
Pull request
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edkerk
2m 42s
fix/kegg-fasta-parity
fix/kegg-fasta-parity
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Make the placement master deterministic across runs
CI
#160:
Pull request
#76
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edkerk
1m 58s
fix/assign-compartments-determinism
fix/assign-compartments-determinism
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Benchmark assign_compartments transport pruning and gap-filling
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#159:
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#75
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edkerk
2m 16s
feat/assignment-ablation-benchmark
feat/assignment-ablation-benchmark
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Compare grRules as logic in diff_models (order-insensitive)
CI
#158:
Pull request
#74
opened by
edkerk
1m 59s
docs/diffmodels-gpr-backport
docs/diffmodels-gpr-backport
1m 59s
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Fix load_delta_g_csv stamping the ΔG missing-value sentinel as a real value
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#157:
Pull request
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opened by
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2m 0s
fix/delta-g-missing-sentinel
fix/delta-g-missing-sentinel
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CI: run the release artifact actions on Node 24
CI
#156:
Pull request
#72
opened by
edkerk
2m 24s
ci/artifact-actions-node24
ci/artifact-actions-node24
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Release
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develop
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Merge branch 'develop'
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