Wire the confidence facets together - #78
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Wires the three confidence facets into a usable pipeline, so the score → review → curate loop works end to end.
Changes
annotate_confidence(model, *, proposal=None, scores=None, facets=None)— one call runs every applicable scorer and returns{facet: reactions_scored}.equationandgene_associationneed only the model;localizationruns only when bothproposalandscoresare given, and is otherwise skipped rather than failing.facets=[...]restricts the set.curation_priorityskips curated placements — a reaction whoselocalizationfacet ismark_curateddrops from the review queue (newinclude_curated=False);include_curated=Truekeeps it.raven_toolbox.annotation.add_sbo_terms(model).