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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 519 repositories
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access's past year of commit activity
    Jupyter Notebook 125 41 21 6 Updated Oct 6, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 56 11 Updated Oct 6, 2026
  • scCairns Public

    Iterative integration/embedding and inspection/filtering with logged manifest of decisions.

    AllenInstitute/scCairns's past year of commit activity
    Python 0 0 0 0 Updated Oct 6, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 2 MIT 0 71 2 Updated Oct 6, 2026
  • zarr-vectors-py Public

    Utilties and tools for working with data in the Zarr-vectors data structure

    AllenInstitute/zarr-vectors-py's past year of commit activity
    Python 8 BSD-3-Clause 3 0 1 Updated Oct 6, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Oct 6, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 288 6 Updated Oct 6, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 27 2 Updated Oct 6, 2026
  • FISHsim Public Forked from Roth-Lab/FISHsim
    AllenInstitute/FISHsim's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Oct 6, 2026
  • OCS-Submission-Capsule-API Public
    AllenInstitute/OCS-Submission-Capsule-API's past year of commit activity
    Python 0 0 0 0 Updated Oct 5, 2026
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