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Remove check of feature standard deviations - #162

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choisant wants to merge 4 commits into
umami-hep:mainfrom
choisant:patch-1
Open

Remove check of feature standard deviations#162
choisant wants to merge 4 commits into
umami-hep:mainfrom
choisant:patch-1

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@choisant

@choisant choisant commented Aug 20, 2026

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Summary

Pipeline failed because I had a feature with no variation (std = 0) as my data is split into two separate parts (pileup and HS). I still need this feature as I am running two separate pipelines which will be combined later for a special use-case. Propose to remove this check.

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@codecov

codecov Bot commented Aug 20, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 95.33%. Comparing base (8566c5d) to head (a1c616b).

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #162      +/-   ##
==========================================
- Coverage   95.34%   95.33%   -0.01%     
==========================================
  Files          25       25              
  Lines        2340     2339       -1     
==========================================
- Hits         2231     2230       -1     
  Misses        109      109              

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Comment thread upp/stages/normalisation.py

@afroch afroch left a comment

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Sorry, approved although there is a change needed

@choisant

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Sorry, approved although there is a change needed

Fixed it now!

@choisant choisant changed the title Remove unnecessary checks blocking pipeline Remove check of feature standard deviations Aug 24, 2026
Comment thread changelog.md

- Add container image documentation and generic Slurm/HTCondor submission scripts with config-driven component enumeration [#160](https://github.com/umami-hep/umami-preprocessing/pull/160)
### [v0.3.2](https://github.com/umami-hep/umami-preprocessing/releases/tag/v0.3.2) (04.08.2026)
- Remove assert check for zero standard deviation on features in normalization step

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This is placed wrong. I needs to go to the top under latest

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It also needs the PR as hyperlink (see the other entries)

@dkobylianskii

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Can we add a warning instead of just removing the line?
So people will know that they have some bug or that need manually setup std values.
@choisant @afroch

@afroch

afroch commented Aug 25, 2026

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Can we add a warning instead of just removing the line?
So people will know that they have some bug or that need manually setup std values.
@choisant @afroch

Yeah I'm good with that

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3 participants