fix(embed): one completeness contract for both backends, and a FASTA coverage check - #474

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tsenoner merged 10 commits into

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fix/embed-completeness-contract

Aug 19, 2026

Commits on Aug 19, 2026

docs(openspec): propose the embed completeness contract

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fix(embed): give both backends one completeness contract

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feat(embed): expose --max-length so a skipped sequence is actionable

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fix(prepare): check embeddings against the supplied FASTA before similarity

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test(embed): cover the completeness contract and FASTA coverage

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docs(embed): document the completeness contract and --max-length

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docs(openspec): archive the embed completeness contract

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test(embed): pin the --max-length rejection independently of terminal width

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fix(prepare): make -f reach every HDF5 input and reject a path that is not there

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Merge branch 'main' into fix/embed-completeness-contract

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