iCodon customizes gene expression based on the codon composition
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Oct 28, 2023 - R
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mrna-stability
Here are 8 public repositories matching this topic...
Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability
bioinformatics genomics paper gene-regulation biological-data-analysis mrna-stability codon-optimality cis-regulatory-elements
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Dec 19, 2021 - Jupyter Notebook
Python client for Ginkgo's AI model API
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Mar 10, 2025 - Python
Codon language model disentangled from protein level semantics.
synthetic-biology cds pytorch dna language-model codon-optimization codon pytorch-lightning mrna-stability protein-language-model mrna-editing mrna-degradation mrna-translation-efficiency mrna-design codon-language-models mrna-sequences
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Aug 28, 2026 - Python
The model that will predict the degradation rates at each base of an RNA molecule.
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Aug 28, 2021 - Jupyter Notebook
Study-aware reconstruction and cross-species benchmarking of mammalian mRNA half-life PC1 labels
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Jul 17, 2026 - Python
ExprDecay: Source-Specific Rank-Calibrated Integration of Cross-Context Expression Profiles for Gene-Level Relative RNA Half-Life Ranking
machine-learning bioinformatics computational-biology gene-expression mrna-stability exprdecay mrna-decay
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Aug 10, 2026 - Python
Code and data deposit for mRNA stability analysis
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Jun 15, 2024 - Jupyter Notebook
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