Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"
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Oct 4, 2024 - Python
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cross-species
Here are 13 public repositories matching this topic...
Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
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Jan 27, 2024 - Python
This is the lesson repository for the Workshop on Computational Techniques and Resources for Effective Translational Research in Alzheimer's Disease.
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Jul 7, 2026 - R
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Dec 30, 2020
Cross-species integration of single cell RNA-seq data from the primary motor cortex between human, mouse and drosophila using expiMap and SATURN
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Jul 28, 2023 - Jupyter Notebook
Adaptive elastic-net sparse PCA for robust cross-species, cross-platform analysis of complex gene expression data in Alzheimer’s disease
bioinformatics rna-seq r cross-platform matrix-factorization transcriptome alzheimers-disease cross-species aespca
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Mar 17, 2022 - R
This project is a part of BRAIN Initiative Cell Census Network (2017-2022)
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Feb 27, 2025 - MATLAB
Philip Ahmadzada, Perry Moerland: Comparative single-cell analysis of macrophages and macrophage subtypes in atherosclerotic mice and humans
education research single-cell encore single-cell-rna-seq single-cell-analysis cross-species atherosclerosis
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Jun 24, 2025 - Jupyter Notebook
A gene regulation model reveals an ancestral adaptation response to particulate exposure triggered by nanomaterials
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Oct 31, 2024 - R
Workflow to identify functional cis-regulatory regions for each annotated cell type
deep-learning hi-c promoters enhancers single-cell-rna-seq single-cell-atac-seq cross-species shap single-cell-methylation single-cell-multiomics cis-regulatory-elements
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Apr 17, 2024 - Python
Reproducible Python workflow for ortholog-resolved cross-species proteomic analysis of human and mouse dorsal root ganglia (DRG), including differential abundance testing, enrichment analysis, GSEA, and systems-level comparison.
bioinformatics neuroscience human mouse proteomics mass-spectrometry gsea orthologs cross-species drg dorsal-root-ganglion pain-research
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Jun 6, 2026 - Python
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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Jul 6, 2021 - Python
Incorporating Triplet Error for Predicting PPIs using Deep Learning
deep-learning computational-biology protein-protein-interaction cross-species protein-protein-interactions
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Feb 4, 2025 - Python
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