low-biomass

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

An open-source R package containing decontamination pipelines for low-biomass microbiome data

Sensitivity analysis and QC tools for choosing decontam thresholds in microbiome studies

A 16S-rRNA interactive analysis workflow written in R. Contains modular sections devoted to QC, filtering, diversity analysis, and taxonomic/phylogenetic visualisations.

16S sequencing analysis pipeline for low biomass samples