europepmc

BibexPy is a Python-based software designed to streamline bibliometric data integration, deduplication, metadata enrichment, and format conversion. It simplifies the preparation of high-quality datasets for advanced analyses by automating traditionally manual and error-prone tasks.

A repository for brainstorming and prototyping ideas related to the eLifeSprint project Annotate them all (https://sprint.elifesciences.org/annotate-them-all/)

Open Access PDF Downloader with EuropePMC

Search and retrieve bioRxiv and medRxiv preprints — by DOI, date interval, or keyword — via MCP. STDIO or Streamable HTTP.

Repository of ML models and algorithm built for the EMBL publication project

Retrieve full text of bioRxiv, medRxiv & arXiv preprints as structured sections — to ground LLM/agent scientific reasoning, deep research, and RAG. CLI + Python + MCP.

Shared Python library for biomedical literature tools — LLM abstraction, quality assessment, transparency analysis, full-text retrieval, publication ingestion, and database utilities.

MCP server that turns a bioRxiv DOI into clean markdown full text (S3 .meca → JATS → markdown), plus free Europe PMC search. (medRxiv has its own package, medrxiv-mcp.)

MCP server that turns a medRxiv DOI into clean markdown full text (S3 .meca → JATS → markdown), plus free Europe PMC search. (bioRxiv has its own package, biorxiv-mcp.)

ROR prototype developed during the FREYA project

Dynamic medical-research agent that plans, spawns specialist sub-agents, and retrieves & appraises biomedical literature (PubMed, arXiv, OpenAlex, Europe PMC) into cited reports. Built on SwarmAI with RAG, relevance + citation gates, and an automated quality-eval framework. Java 21 · Spring AI.

Chrome extension that finds the freely available preprint version of a paywalled journal article. Detects OA status via Unpaywall and chains Crossref, bioRxiv/medRxiv, Europe PMC, Semantic Scholar, and a title fuzzy fallback.

Open-source browser extension for publisher context and explainable post-publication signals across scholarly literature.

Checks whether a health article's claims are actually what the cited study found, keeping NOT SUPPORTED and NOT CHECKED strictly apart

Reads the data from Europe PMC and visualize into a Histogram.

Repository for code to create the Europe PMC external links

Paste a title and abstract, get journals that actually publish work like yours — with real APCs, peer-review times, open-access status, and your library's agreement coverage. 32,565 journals, 16 fields, no account needed.

Europe PubMed Central — biomedical literature search and full text

Search Europe PMC life sciences literature for articles, abstracts, and author records