antibody

The fastest shell plugin manager.

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.

📚 Tools and databases for analyzing HLA and VDJ genes.

Improved antibody structure-based design using inverse folding

Analysis of immune repertoire sequencing results

Sapiens is a human antibody language model based on BERT.

Official repository for discrete Walk-Jump Sampling (dWJS)

Official repository for discrete Walk-Jump Sampling (dWJS)

High-throughput mapping and domain partitioning of antigen receptor sequences

ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.

An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequencing.

$HOME of my ~/.dotfiles (macOS, Asahi Linux & Linux)

Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and antibody complex structures.

Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

A high-performance antibody and TCR sequence numbering tool for Rust, Python, Polars and JS/TS.

Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide

structural antibody parser and database

Inference code for Bio-Inspired Antibody Language Model