antibodies

AbLang: A language model for antibodies

Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

AI model and framework for scoring antibody-antigen complexes

Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

AbLang: A language model for antibodies

An R package for simulating serosurvey data using custom models for the data-generating process

Peptide Microarray Workflow. Python, open-source

Code repository for Master Thesis "Antibody-antigen binding affinity prediction through the use of geometric deep learning"

Benchmarking computational methods for B cell receptor reconstruction from single cell RNA-seq data

Integrated LC-MS/MS-based de novo sequencing of antibody chains in complex mixtures

Layer-wise selective Fine-Tuning of protein language models for Antibodies

A WebApp for Antibody Research

Prediction of hydrophilicity & antigenic determinants from protein sequences

An R package and framework for epitope-specific antibody profiling for the data obtained with the Bead-Based Epitope Assay (BBEA)

Latent Labs is a London- and San Francisco-based frontier AI lab founded in 2023 by Dr. Simon Kohl, a former senior research scientist on DeepMind's Nobel Prize-winning AlphaFold 2 and co-lead of DeepMind's protein design team.

PyMOL wizard for performing molecular dynamics simulations with OpenMM.

THPdb2: Compilation of FDA Approved Therapeutic Peptides and Proteins

This repo contains the code and data models that were used in the Harmony project.

Code and data for the ML analysis of humoral and cellular responses to SARS-CoV-2