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acinetobacter

Here are 6 public repositories matching this topic...

UPHL-BioNGS / Grandeur

UPHL's Reference Free Pipeline

Updated Sep 4, 2026
Nextflow

KingLouis237 / Barcode

A transparent ONT bacterial assembly case study for an *Acinetobacter* barcode07 isolate, built not only to generate an assembly, but to show how raw reads become an interpretable genome through QC evidence, assembler comparison, graph checks, phylogeny, annotation, documented decisions, and honest limitations.

python reproducible-research bioinformatics-pipeline phylogenetics kegg-pathway genome-assembly kat bandage 16s-rrna nanopore-sequencing busco long-read-sequencing quast flye iqtree acinetobacter workflow-documentation bacterial-genomics ont-sequencing

Updated Mar 26, 2026
HTML

miliomics / Acinetobacter-johnsonii

Plasmidome, resistome, and virulence-associated genes characterization of Acinetobacter johnsonii in NASA cleanrooms and a clinical setting.

bioinformatics nasa metagenomics comparative-genomics ireland antimicrobial-resistance acinetobacter

Updated Feb 3, 2026

vikos77 / Acinetobacter-defence-systems

Genomic analysis of bacterial defence systems in Acinetobacter species revealing adaptive trade-offs with antimicrobial resistance evolution

bioinformatics genomics antimicrobial-resistance acinetobacter bacterial-defence-systems clinical-microbiology phage-therapy

Updated Mar 22, 2026
R

vibbits / acinetobase-static

Database of Acinetobacter strains, genotypes, and phenotypes.

react haskell nix purescript acinetobacter

Updated Oct 28, 2024
HTML

refmyoussef-source / Acinetobacter-Pangenomics

An automated bioinformatics pipeline for bacterial pangenome analysis: from NCBI data acquisition to core-genome construction and visualization.

bioinformatics jupyter-notebook biopython phylogenetics amr comparative-genomics pangenomics roary prokka antimicrobial-resistance abricate fasttree acinetobacter acinetobacter-baumanii

Updated Aug 17, 2026
Jupyter Notebook

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