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Bump dependency floors and add ipywidgets to doc group#83

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Marius1311 merged 1 commit into
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Marius1311/update-dependencies
Jun 9, 2026
Merged

Bump dependency floors and add ipywidgets to doc group#83
Marius1311 merged 1 commit into
mainfrom
Marius1311/update-dependencies

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@Marius1311

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What

  • Modernize declared dependency floors to reflect the versions actually used/tested:
    • openai >=1.90>=2 (was a full major version behind its floor)
    • anthropic >=0.59>=0.75
    • google-genai >=1.27>=1.57
    • squidpy >=1.6>=1.7
    • scanpy >=1.11>=1.11.5
    • rapids-singlecell >=0.12>=0.13
    • colorspacious >=1.1>=1.1.2
  • Add ipywidgets to the doc group so Jupyter/notebook tqdm progress bars render (otherwise tqdm warns IProgress not found), mirroring the cellmapper setup.

Notes

  • No installed versions change (already above the new floors) — only the declared constraints.
  • uv.lock is intentionally not committed (gitignored in this repo).

🤖 Generated with Claude Code

@codecov

codecov Bot commented Jun 9, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.76%. Comparing base (9258b17) to head (ff9c8f8).

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #83      +/-   ##
==========================================
+ Coverage   84.54%   84.76%   +0.21%     
==========================================
  Files          15       15              
  Lines        1372     1372              
==========================================
+ Hits         1160     1163       +3     
+ Misses        212      209       -3     

see 1 file with indirect coverage changes

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Modernize declared floors to reflect versions actually used/tested
(openai was a full major behind its floor): openai>=2, anthropic>=0.75,
google-genai>=1.57, squidpy>=1.7, scanpy>=1.11.5, rapids-singlecell>=0.13,
colorspacious>=1.1.2. Also add ipywidgets to the doc group so Jupyter tqdm
progress bars render, mirroring cellmapper.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
@Marius1311 Marius1311 force-pushed the Marius1311/update-dependencies branch from 58b0fd9 to ff9c8f8 Compare June 9, 2026 14:48
@Marius1311 Marius1311 merged commit b052b06 into main Jun 9, 2026
9 checks passed
@Marius1311 Marius1311 deleted the Marius1311/update-dependencies branch June 9, 2026 15:00
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