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QuaDBio Lab

Quantitative Developmental Biology Lab

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  1. scRNAseq_analysis_vignette scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    276 85

  2. Pando Pando Public

    Multiome GRN inference.

    R 143 26

  3. scMultiome_analysis_vignette scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    84 18

  4. VoxHunt VoxHunt Public

    VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

    HTML 48 6

  5. RNAseq_tutorial RNAseq_tutorial Public

    46 16

  6. simspec simspec Public

    Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

    R 41 3

Repositories

Showing 10 of 57 repositories
  • scembed Public

    Run embedding comparisons for single-cell data

    quadbio/scembed's past year of commit activity
    Python 5 MIT 1 0 4 Updated Sep 7, 2026
  • slurm_sweep Public

    Hyperparameter sweeps on SLURM clusters

    quadbio/slurm_sweep's past year of commit activity
    Python 5 MIT 2 1 2 Updated Sep 7, 2026
  • cellmapper Public

    k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.

    quadbio/cellmapper's past year of commit activity
    Python 16 MIT 4 6 2 Updated Sep 7, 2026
  • cell-annotator Public

    Automatically annotate cell types, consistently across samples.

    quadbio/cell-annotator's past year of commit activity
    Python 27 MIT 2 4 2 Updated Sep 7, 2026
  • trackline Public
    quadbio/trackline's past year of commit activity
    Jupyter Notebook 1 MIT 0 11 (1 issue needs help) 0 Updated Sep 2, 2026
  • cirrocumulus Public Forked from lilab-bcb/cirrocumulus

    Bring your single-cell data to life

    quadbio/cirrocumulus's past year of commit activity
    JavaScript 0 BSD-3-Clause 19 0 0 Updated Aug 27, 2026
  • analysis_template Public template

    Simple template repo for single-cell/spatial analysis

    quadbio/analysis_template's past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Aug 22, 2026
  • ENVI Public Forked from dpeerlab/ENVI
    quadbio/ENVI's past year of commit activity
    Jupyter Notebook 1 MIT 13 0 0 Updated Aug 12, 2026
  • cell-type-annotation Public

    Evidence-driven cell-type annotation skill for Claude Code

    quadbio/cell-type-annotation's past year of commit activity
    Python 2 MIT 0 4 0 Updated Aug 6, 2026
  • scvi-tools-public Public Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell and spatial omics data

    quadbio/scvi-tools-public's past year of commit activity
    Python 0 BSD-3-Clause 482 0 0 Updated Jul 15, 2026