Refactor code style and configuration files

[AStaroverov]

• Updated import statements to use double quotes for consistency across multiple files.
• Refactored functions in parseProgress.ts, results.ts, retentive.ts, simpleRetry.ts, buildLibrary.ts, parseFasta.ts, and parseRepseqioLibrary.ts for improved readability and consistency.
• Added VSCode configuration files for recommended extensions and formatting settings.
• Introduced .oxfmtrc.json and .oxlintrc.json files in multiple directories to standardize formatting and linting configurations.

[gemini-code-assist]

Summary of Changes

Hello, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request focuses on improving the overall code quality, consistency, and developer experience. It introduces standardized formatting and linting configurations, enhances VSCode support, and refactors code for better readability. These changes aim to create a more maintainable and developer-friendly codebase.

Highlights

• Code Style Consistency: Ensured consistent code style by updating import statements to use double quotes and refactoring functions for improved readability across multiple TypeScript files.
• Standardized Configuration: Introduced .oxfmtrc.json and .oxlintrc.json files in multiple directories to standardize formatting and linting configurations, enhancing code quality and maintainability.
• Enhanced VSCode Support: Added VSCode configuration files (extensions.json and settings.json) to recommend extensions and formatting settings, streamlining the development experience for contributors.

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[gemini-code-assist]

Code Review

This pull request updates the project's development tooling by migrating from ESLint to Oxc for linting and formatting, integrating ts-builder for build and check scripts, and updating related package dependencies and configurations across model, test, and ui modules. Additionally, string literals in many TypeScript/Vue files were converted from single to double quotes, and code formatting was adjusted for consistency. The review comments highlight a high-severity issue where a null check is needed for the newHandle object in ui/src/ExportRawBtn/ExportRawBtn.vue to prevent errors if a user cancels a file save dialog. Medium-severity suggestions include simplifying a regex in model/src/progress.ts for better readability and adding comments or checks for LocalImportFileHandle type assertions in ui/src/pages/BuildLibraryPanel.vue and ui/src/pages/SettingsPanel.vue for improved code clarity and safety.