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    12 repositories

    • NA-MPNN

      Public
      Python
      •
      Other
      •10•68•2•0•Updated Jul 15, 2026Jul 15, 2026

    • catcif_tools

      Public
      A set of tools making it easier to work with catted cif files
      Python
      •0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • TMB_pipeline

      Public
      This repository contains tutorials for running a fully deep learning–based pipeline for transmembrane β-barrel (TMB) design. It includes notebooks demonstrating…
      Python
      •0•1•0•0•Updated Jun 23, 2026Jun 23, 2026

    • RoseTTAFold-All-Atom

      Public
      Python
      •
      Other
      •143•816•108•4•Updated May 18, 2026May 18, 2026

    • CA_RFDiffusion

      Public
      Python
      •
      MIT License
      •15•78•9•1•Updated May 4, 2026May 4, 2026

    • Metallohydrolase_Enzyme_Design

      Public
      Official GitHub repository for the manuscript entitled "Computational Design of Metallohydrolases" by Kim, Woodbury, & Ahern et al. published in Nature. This no…
      Jupyter Notebook
      •
      MIT License
      •5•28•2•0•Updated Mar 2, 2026Mar 2, 2026

    • worms

      Public
      working version of the worms code that can be compiled as of 2026-02-13
      Python
      •
      Other
      •1•1•0•0•Updated Feb 13, 2026Feb 13, 2026

    • PLACER

      Public
      PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
      dockingprotein-ligand-interactions
      dockingprotein-ligand-interactions
      Python
      •
      Other
      •40•262•8•1•Updated Nov 5, 2025Nov 5, 2025

    • ipd

      Public
      Various base libraries for code at the IPD
      C++
      •
      Apache License 2.0
      •1•5•1•2•Updated May 2, 2025May 2, 2025

    • mlb

      Public
      Python
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • ppp

      Public
      Prettier Protein Project
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Nov 13, 2024Nov 13, 2024

    • rf_diffusion_all_atom

      Public
      Public RFDiffusionAA repo
      Python
      •
      Other
      •93•483•24•3•Updated Jul 9, 2024Jul 9, 2024
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