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RoseTTAFold-All-Atom: psipred 4.01 (conda) buffer overflow with 276-residue confidential HLA sequence → missing .atab file

Status: Open.

#175 In baker-laboratory/RoseTTAFold-All-Atom;

· A-pples opened on Jan 19, 2026

Double bond of ligand is being flipped from cis to trans during folding

Status: Open.

#173 In baker-laboratory/RoseTTAFold-All-Atom;

· therealsemechki opened on Jun 21, 2025

_pdb.ffindex file is missing.

Status: Open.

#172 In baker-laboratory/RoseTTAFold-All-Atom;

· Wzx0818 opened on Jun 16, 2025

README instructs to export incorrect DB paths

Status: Open.

#170 In baker-laboratory/RoseTTAFold-All-Atom;

· jscgh opened on Jun 16, 2025

Running Protein_sm code , FileNotFoundError: [Errno 2] No such file or directory: '7qxr/A/t000_.msa0.a3m'

Status: Open.

#169 In baker-laboratory/RoseTTAFold-All-Atom;

· Wzx0818 opened on Jun 14, 2025

Can‘t download BFD file.

Status: Open.

#168 In baker-laboratory/RoseTTAFold-All-Atom;

· Wzx0818 opened on Jun 12, 2025

Running multiple covalent modifications

Status: Open.

#166 In baker-laboratory/RoseTTAFold-All-Atom;

· aclark36581 opened on Apr 11, 2025

How to estimate protein small molecule affinity

Status: Open.

#165 In baker-laboratory/RoseTTAFold-All-Atom;

· hzaurzli opened on Mar 27, 2025

please help me

Status: Open.

#162 In baker-laboratory/RoseTTAFold-All-Atom;

· fei-st opened on Feb 20, 2025

run_inference.log empty file

Status: Open.

#160 In baker-laboratory/RoseTTAFold-All-Atom;

· aclark36581 opened on Jan 20, 2025

Can we use pdb for receptor instead of fasta for small molecule docking?

Status: Open.

#159 In baker-laboratory/RoseTTAFold-All-Atom;

· arupmondal835 opened on Jan 11, 2025

Why use Mamba and Conda in the installation instructions?

Status: Open.

#157 In baker-laboratory/RoseTTAFold-All-Atom;

· e-eight opened on Jan 6, 2025