Repositories list

• DeepVRegulome

  Public
  DeepVRegulome is an end‑to‑end framework for predicting the functional impact of small somatic variants in non‑coding regulatory regions (splice sites and trans…

  deep-learninggenomicsvariant-effect-prediction+ 1

  deep-learninggenomicsvariant-effect-predictiondnabert

  Jupyter Notebook

  •00 forks•44 stars•00 issues•11 pull request•Updated Jul 27, 2026Jul 27, 2026

• TransTEx_datasets

  Public
  TransTEx method application datasets

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 10, 2026Jul 10, 2026

• TSProm

  Public
  TSProm paper:

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 17, 2026Jun 17, 2026

• DNABERT-Enhancer_Portal

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 12, 2026Apr 12, 2026

• DNABERT-Enhancer

  Public
  A Finetuned model for Enhancer prediction and our generative Cumulative Enhancer Dataset

  Python

  •

  Apache License 2.0

  •00 forks•1212 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• ExTraMapper-2023

  Public
  ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.

  Jupyter Notebook

  •

  MIT License

  •66 forks•00 stars•00 issues•00 pull requests•Updated Jun 25, 2025Jun 25, 2025

• DavuluriLab.github.io

  Public
  This is the official webpage for Prof. Ramana Davuluri lab at Stony Brook University

  websiteacademic

  websiteacademic

  SCSS

  •11 fork•11 star•00 issues•00 pull requests•Updated Oct 11, 2024Oct 11, 2024

• dbSNP-text-summarization

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 7, 2024Aug 7, 2024

• TransTEx

  Public
  R package for TransTEx: Novel tissue-specificity scoring method for grouping human transcriptome in-to different expression groups

  R

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2024Mar 2, 2024

• BMI_511

  Public
  Assignments for BMI_511

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2023Feb 4, 2023

• RVDavuluri.github.io

  Public
  lab-website

  SCSS

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jun 27, 2022Jun 27, 2022

• ExTraMapper

  Public
  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Dec 7, 2021Dec 7, 2021

• isoform_drug_targets

  Public
  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 7, 2021Dec 7, 2021

• DNABERT

  Public
  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  Python

  •179179 forks•00 stars•00 issues•00 pull requests•Updated Feb 22, 2021Feb 22, 2021