DNABERT-Enhancer_Portal

Overview:

The DNABERT-Enhancer portal offers an interactive platform to explore candidate gain- and loss-of-function enhancer variants predicted by the DNABERT-Enhancer-350 model using ENCODE SCREEN enhancers (350 bp). It also provides access to genome-wide enhancer predictions across the human reference genome (GRCh38). This web application enables users to visualize, search, and interpret enhancer regions and their potential functional impact in a genomic context.

Study layout:

Repository Structure:

your-app/
│
├── app.py
├── requirements.txt
├── README.md
│
├── data/
│   └── whole_genome_prediction_data/
│       ├── WGP_1.csv
│       ├── WGP_2.csv
│       ├── WGP_3.csv
│       ├── WGP_4.csv
│       ├── WGP_5.csv
│       ├── Detailed_info_enhancer_GOF.csv
│       ├── Detailed_info_enhancer_LOF.csv
│       ├── Detailed_info_non-enhancer_GOF.csv
│       └── test.txt
│
├── figures/
│   ├── Enhancer.png
│   ├── Graphical_abstract.png
│   └── test.txt