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[BUG] Hybracter hybrid generating large SAM intermediate files during processing

Status: Open.

#165 In gbouras13/hybracter;

· letseatebil opened on Jul 23, 2026

[BUG] Hybracter apptainer singularity version 1.14.0 error with contaminants.yaml

Status: Open.

#163 In gbouras13/hybracter;

· NicolasNesi opened on Jul 20, 2026

Problem in Singularity Container building - Medaka

Status: Open.

#159 In gbouras13/hybracter;

· Nilad opened on Jun 23, 2026

Container installation issues[BUG]

Status: Open.

#158 In gbouras13/hybracter;

· sarapita opened on Jun 10, 2026

[BUG] --auto flag fails on macOS ARM64 with spaces injected around sample name in lrge_estimated_chromosome_size.txt path

Status: Open.

#155 In gbouras13/hybracter;

· suzumar opened on May 20, 2026

Lost plasmids

Status: Open.

#154 In gbouras13/hybracter;

· valery-shap opened on Apr 8, 2026

An error is reported in the hybracter test

bugSomething isn't workingSomething isn't working

Status: Open.

#126 In gbouras13/hybracter;

· Liu-Shiyu-cn opened on Feb 20, 2025

Workaround for bacteria with multiple chromosomes

Status: Open.

#124 In gbouras13/hybracter;

· ishanb42 opened on Feb 15, 2025

Unicycler not found error

bugSomething isn't workingSomething isn't working

Status: Open.

#102 In gbouras13/hybracter;

· schmittel opened on Oct 17, 2024

Mamba not detected with snakemake

bugSomething isn't workingSomething isn't working

Status: Open.

#85 In gbouras13/hybracter;

· dinmoz opened on Aug 14, 2024

Can this program be run on an external hard drive?

bugSomething isn't workingSomething isn't working

Status: Open.

#83 In gbouras13/hybracter;

· JavierFFavieres opened on Jul 2, 2024

Error: the assembly_1 and assembly_2 assemblies need to contain the same number of sequences

bugSomething isn't workingSomething isn't working

Status: Open.

#78 In gbouras13/hybracter;

· rukjis opened on May 12, 2024