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bcftbx/jobs/runners: update SlurmRunner to handle problem with Slurm … Python CI #307: Commit 98d7c98 pushed by pjbriggs
4m 5s slurm-runner-handle-controller-unavailable
slurm-runner-handle-controller-unavailable
4m 5s
Graph Update: pip in /., /docs #1465056463 Dependency Graph #5: by dependabot Bot
54s devel
devel
54s
Graph Update: pip in /., /docs #1463327959 Dependency Graph #4: by dependabot Bot
56s devel
devel
56s
Merge pull request #244 from fls-bioinformatics-core/refactor-bcftbx-… Python CI #306: Commit 4bf3560 pushed by pjbriggs
3m 24s devel
devel
3m 24s
Refactor 'fasta' module into 'io.fasta' Python CI #305: Pull request #244 opened by pjbriggs
3m 29s refactor-bcftbx-fasta-module-into-io
refactor-bcftbx-fasta-module-into-io
3m 29s
bcftbx.cli.split_fasta: update to use FastaChromIterator from '.io.fa… Python CI #304: Commit 9767861 pushed by pjbriggs
3m 24s refactor-bcftbx-fasta-module-into-io
refactor-bcftbx-fasta-module-into-io
3m 24s
WIP update bcftbx CLI applicances to use refactored libraries Python CI #303: Pull request #243 opened by pjbriggs
3m 28s update-bcftbx-cli-for-refactored-libraries
update-bcftbx-cli-for-refactored-libraries
3m 28s
bcftbx.cli.make_macs_xls: fix bugs from switching to 'TabFile' from '… Python CI #302: Commit b5521c3 pushed by pjbriggs
3m 31s update-bcftbx-cli-for-refactored-libraries
update-bcftbx-cli-for-refactored-libraries
3m 31s
bcftbx.cli.split_fastq: updated to use the new 'utils.parser' and 'ut… Python CI #301: Commit 6737b82 pushed by pjbriggs
3m 39s update-bcftbx-cli-for-refactored-libraries
update-bcftbx-cli-for-refactored-libraries
3m 39s
Merge pull request #242 from fls-bioinformatics-core/refactor-FASTQFi… Python CI #300: Commit e5cf8f7 pushed by pjbriggs
3m 30s devel
devel
3m 30s
Refactor 'FASTQFile' into new 'io.fastq' module Python CI #299: Pull request #242 synchronize by pjbriggs
3m 29s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
3m 29s
bcftbx.cli.verify_paired: update to use 'bcftbx.io.fastq'. Python CI #298: Commit 96db532 pushed by pjbriggs
3m 26s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
3m 26s
Refactor 'FASTQFile' into new 'io.fastq' module Python CI #297: Pull request #242 opened by pjbriggs
3m 27s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
3m 27s
bcftbx.FASTQFile: reimplement using 'bcftbx.io.fastq'. Python CI #296: Commit 88f503a pushed by pjbriggs
3m 44s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
3m 44s
bcftbx.io.fastq: update docstring for 'fastqs_are_pair' function. Python CI #295: Commit 61897e6 pushed by pjbriggs
3m 31s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
3m 31s
bcftbx.io.fastq: fix bug in unit test. Python CI #294: Commit 523a1d2 pushed by pjbriggs
3m 33s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
3m 33s
bcftbx.io.fastq: new submodule reimplementing functionality from 'bcf… Python CI #293: Commit 27b0e34 pushed by pjbriggs
5m 17s refactor-FASTQFile-module-into-io-fastq
refactor-FASTQFile-module-into-io-fastq
5m 17s
Graph Update: pip in /. #1416486771 Dependency Graph #3: by dependabot Bot
47s devel
devel
47s
Merge pull request #241 from fls-bioinformatics-core/refactor-TabFile… Python CI #292: Commit cbb14f0 pushed by pjbriggs
3m 18s devel
devel
3m 18s
Refactor 'bcftbx.TabFile' module into new module 'bcftbx.io.tabular' Python CI #291: Pull request #241 synchronize by pjbriggs
3m 36s refactor-TabFile-into-io-tabular
refactor-TabFile-into-io-tabular
3m 36s
bcftbx.platforms.illumina.samplesheet: update to use TabFile from io.… Python CI #290: Commit 0716e0e pushed by pjbriggs
3m 34s refactor-TabFile-into-io-tabular
refactor-TabFile-into-io-tabular
3m 34s
Refactor 'bcftbx.TabFile' module into new module 'bcftbx.io.tabular' Python CI #289: Pull request #241 synchronize by pjbriggs
3m 36s refactor-TabFile-into-io-tabular
refactor-TabFile-into-io-tabular
3m 36s
bcftbx.TabFile: reimplement based on 'io.tabular'. Python CI #288: Commit 0f315b1 pushed by pjbriggs
3m 31s refactor-TabFile-into-io-tabular
refactor-TabFile-into-io-tabular
3m 31s
Refactor 'bcftbx.TabFile' module into new module 'bcftbx.io.tabular' Python CI #287: Pull request #241 opened by pjbriggs
3m 37s refactor-TabFile-into-io-tabular
refactor-TabFile-into-io-tabular
3m 37s
bcftbx: add 'io' subpackage to 'setup.py' and add __init__.py file. Python CI #286: Commit 45daa41 pushed by pjbriggs
3m 33s refactor-TabFile-into-io-tabular
refactor-TabFile-into-io-tabular
3m 33s