🖥️ 🧬 Bioinformatics PhD | Full-Stack Development | System Administration | dbinfo LLC 🧬 🖥️
- Design reproducible bioinformatics pipelines on high-performance computing clusters.
- Develop and host portable shiny dashboards for genomic data digestion.
- Consult on experimental design to optimize effect size and select suitable statistical analyses.
I am a freelance bioinformatics / data analysis consultant. I provide a service that includes the full-stack of a pipeline; from low-level tasks like database normalization to high-level tasks like interactive visualizations.
- This includes expertise in
- data storage, cloud infrastructure
(proxmox, synology, PSQL) - reproducible containerized analysis
(VMs, LXCs, docker, singularity) - quality controlling raw sequence data
(fastqc, decontam, trimmomatic) - optimizing resource consumption
(SLURM, multithreading, complexity analysis) - a plethora of statistical frameworks
(data wrangling, RNA-Seq, phylogenetic analyses, machine learning) - statistical interpretation and interactive visualization
(ggplot2, shiny)
- data storage, cloud infrastructure
This allows me to have insight into a breadth of data-science challenges that I translate into an accelerated research throughput for my collaborators. So whether your bottleneck is scaling Big DataTM onto an HPC, or digesting the output of a niche statistical framework, I will steward your data every step of the way to ensure consistency and interpretability of the final output.
Contact me at dylan@dbinfo.dev and I will happily design a custom solution for you.
Many of my collaborations have been published in high ranking journals with more on the way
- Transcriptomic dynamics of the elite hibernator and cold-stressed human cells: potential insights into mammalian hibernation
- Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions
- Genome wide clustering on integrated chromatin states and Micro-C contacts reveals chromatin interaction signatures
- ⭐ (First Author) Machine learning of enhancer-promoter specificity based on enhancer perturbation studies reveals a distinct class of enhancers
Some of my unpublished projects are also hosted here on github
cnv_calculator - Genetic alteration incidence calculator for oncological pharmacology. (Link)
shinyRER – Relative Evolutionary Rate analysis and dashboard (Link)
shinyEVE - Evolutionary Expression analysis and dashboard (Link)
Connect with Me dylan@dbinfo.dev