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Secondary object #56

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Secondary object #56

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f9f0424
fixed typo cyto_model -> cellpose_model
Dec 6, 2025
e42440e
clean and re-based
Dec 8, 2025
147fd97
restored foci_channel in second obj phenotyping
Dec 8, 2025
46f3a66
integrated ML models for secondary object segmentation
Dec 15, 2025
ea905cc
consistent naming with brieflow
Dec 17, 2025
70995de
Display feature list in the same cell as get unique feature types
Dec 18, 2025
66cdbe3
correct extract feature list
Dec 18, 2025
97ad136
pass use_ml_segmentation to identify_second_objs.py
Dec 18, 2025
096176e
Merge pull request #59 from cheeseman-lab/secondary_object_ML
akcd1 Jan 21, 2026
2e0d705
added support notebook for training custom ML segmentation model
Feb 2, 2026
e719c2b
updated to match main and enhanced alignment
Feb 2, 2026
b9fcdf0
updated memory allocations
Feb 2, 2026
2abf1a0
notebook cleanup
Feb 2, 2026
9f7d11a
Merge pull request #66 from cheeseman-lab/secondary_obj_MLtrain
akcd1 Feb 5, 2026
fcdaf14
update for secondary object aggregate integration
Apr 10, 2026
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