Secondary object#56

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akcd1 wants to merge 15 commits into

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secondary_object

Commits on Dec 8, 2025

fixed typo cyto_model -> cellpose_model
acepedadiaz
committed
clean and re-based
acepedadiaz
committed
restored foci_channel in second obj phenotyping
acepedadiaz
committed

Commits on Dec 15, 2025

integrated ML models for secondary object segmentation
edeny
committed

Commits on Dec 17, 2025

consistent naming with brieflow
edeny
committed

Commits on Dec 18, 2025

Commits on Jan 21, 2026

Merge pull request #59 from cheeseman-lab/secondary_object_ML
akcd1
authored

Commits on Feb 2, 2026

added support notebook for training custom ML segmentation model
acepedadiaz
committed
updated to match main and enhanced alignment
acepedadiaz
committed
updated memory allocations
acepedadiaz
committed
notebook cleanup
acepedadiaz
committed

Commits on Feb 5, 2026

Merge pull request #66 from cheeseman-lab/secondary_obj_MLtrain
akcd1
authored

Commits on Apr 10, 2026

update for secondary object aggregate integration

acepedadiaz
and
claude
committed