Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
broadinstitute
/
CellBender
Public
Notifications
You must be signed in to change notification settings
Fork
91
Star
410
Code
Issues
175
Pull requests
14
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights
Actions: broadinstitute/CellBender
Actions
All workflows
Workflows
Benchmark CellBender
Benchmark CellBender
build
build
Build and Push Docker Image
Build and Push Docker Image
CodeQL
CodeQL
Dependabot Updates
Dependabot Updates
Dependency Graph
Dependency Graph
docs-build
docs-build
packaging-check
packaging-check
Upload Python Package to PyPI
Upload Python Package to PyPI
validate WDL
validate WDL
Show more workflows...
Management
Caches
Deployments
build
build
Actions
Loading...
Loading
Sorry, something went wrong.
Uh oh!
There was an error while loading.
Please reload this page
.
will be ignored since log searching is not yet available
Show workflow options
Create status badge
Create status badge
Loading
Uh oh!
There was an error while loading.
Please reload this page
.
ci.yml
will be ignored since log searching is not yet available
65 workflow runs
65 workflow runs
Event
Filter by Event
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching events.
Status
Filter by Status
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching statuses.
Branch
Filter by Branch
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching branches.
Actor
Filter by Actor
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching users.
Upgrade noise count estimation
build
#65:
Pull request
#466
synchronize by
sjfleming
6m 44s
sf-modernization-estimation
sf-modernization-estimation
6m 44s
View #466
View workflow file
Upgrade noise count estimation
build
#64:
Pull request
#466
synchronize by
sjfleming
7m 31s
sf-modernization-estimation
sf-modernization-estimation
7m 31s
View #466
View workflow file
Upgrade noise count estimation
build
#63:
Pull request
#466
synchronize by
sjfleming
7m 36s
sf-modernization-estimation
sf-modernization-estimation
7m 36s
View #466
View workflow file
Upgrade noise count estimation
build
#62:
Pull request
#466
synchronize by
sjfleming
6m 41s
sf-modernization-estimation
sf-modernization-estimation
6m 41s
View #466
View workflow file
Upgrade noise count estimation
build
#61:
Pull request
#466
synchronize by
sjfleming
17m 28s
sf-modernization-estimation
sf-modernization-estimation
17m 28s
View #466
View workflow file
Stop mckp from silently swallowing the requested device
build
#60:
Pull request
#473
opened by
BenjaminDEMAILLE
-1s
BenjaminDEMAILLE:fix/mckp-device-transparency
BenjaminDEMAILLE:fix/mckp-device-transparency
-1s
View #473
View workflow file
Do not divide by psutil.cpu_count() without checking it
build
#59:
Pull request
#472
opened by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:fix/monitor-cpu-count
BenjaminDEMAILLE:fix/monitor-cpu-count
Action required
View #472
View workflow file
Keep the noise-count axis intact when chunking the posterior
build
#58:
Pull request
#471
opened by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:fix/chunked-iterator-column-axis
BenjaminDEMAILLE:fix/chunked-iterator-column-axis
Action required
View #471
View workflow file
Make a fresh install work, and make CI test what users install
build
#57:
Pull request
#470
opened by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:fix/pin-requirements
BenjaminDEMAILLE:fix/pin-requirements
Action required
View #470
View workflow file
Fix HTML report generation by running nbconvert in the right interpreter
build
#56:
Pull request
#469
opened by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:fix/html-report
BenjaminDEMAILLE:fix/html-report
Action required
View #469
View workflow file
Upgrade noise count estimation
build
#55:
Pull request
#466
synchronize by
sjfleming
8m 40s
sf-modernization-estimation
sf-modernization-estimation
8m 40s
View #466
View workflow file
Fine tune github action for benchmarkinig (#464)
build
#54:
Commit
18263f4
pushed by
sjfleming
9m 21s
main
main
9m 21s
View workflow file
Add MPS (Apple Silicon GPU) support alongside CUDA
build
#53:
Pull request
#467
synchronize by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:feature/mps-support
BenjaminDEMAILLE:feature/mps-support
Action required
View #467
View workflow file
Add MPS (Apple Silicon GPU) support alongside CUDA
build
#52:
Pull request
#467
synchronize by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:feature/mps-support
BenjaminDEMAILLE:feature/mps-support
Action required
View #467
View workflow file
Fine tune github action for benchmarkinig
build
#51:
Pull request
#464
synchronize by
sjfleming
7m 21s
sf-benchmark-fixes
sf-benchmark-fixes
7m 21s
View #464
View workflow file
Make the Jupyter report dependencies optional
build
#50:
Pull request
#468
opened by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:fix/optional-report-deps
BenjaminDEMAILLE:fix/optional-report-deps
Action required
View #468
View workflow file
Add MPS (Apple Silicon GPU) support alongside CUDA
build
#49:
Pull request
#467
opened by
BenjaminDEMAILLE
Action required
BenjaminDEMAILLE:feature/mps-support
BenjaminDEMAILLE:feature/mps-support
Action required
View #467
View workflow file
Upgrade noise count estimation
build
#48:
Pull request
#466
opened by
sjfleming
8m 20s
sf-modernization-estimation
sf-modernization-estimation
8m 20s
View #466
View workflow file
doc changes, add 0.4.0 benchmark (#465)
build
#47:
Commit
7601f5e
pushed by
sjfleming
18m 4s
main
main
18m 4s
View workflow file
Fine tune github action for benchmarkinig
build
#46:
Pull request
#464
synchronize by
sjfleming
7m 46s
sf-benchmark-fixes
sf-benchmark-fixes
7m 46s
View #464
View workflow file
Doc changes, add 0.4.0 benchmark
build
#45:
Pull request
#465
opened by
sjfleming
13m 43s
sf-doc-updates-20260813
sf-doc-updates-20260813
13m 43s
View #465
View workflow file
Fine tune github action for benchmarkinig
build
#44:
Pull request
#464
synchronize by
sjfleming
26m 0s
sf-benchmark-fixes
sf-benchmark-fixes
26m 0s
View #464
View workflow file
Fine tune github action for benchmarkinig
build
#43:
Pull request
#464
synchronize by
sjfleming
9m 51s
sf-benchmark-fixes
sf-benchmark-fixes
9m 51s
View #464
View workflow file
Fine tune github action for benchmarkinig
build
#42:
Pull request
#464
synchronize by
sjfleming
7m 51s
sf-benchmark-fixes
sf-benchmark-fixes
7m 51s
View #464
View workflow file
Fine tune github action for benchmarkinig
build
#41:
Pull request
#464
synchronize by
sjfleming
8m 40s
sf-benchmark-fixes
sf-benchmark-fixes
8m 40s
View #464
View workflow file
Previous
1
2
3
Next
You can’t perform that action at this time.