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Pull requests: broadinstitute/CellBender

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Pull requests list

Stop mckp from silently swallowing the requested device
#473 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
Do not divide by psutil.cpu_count() without checking it
#472 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
Keep the noise-count axis intact when chunking the posterior
#471 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
1
Make a fresh install work, and make CI test what users install
#470 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
1
Fix HTML report generation by running nbconvert in the right interpreter
#469 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
1
Make the Jupyter report dependencies optional
#468 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
1
Add MPS (Apple Silicon GPU) support alongside CUDA
#467 opened Aug 14, 2026 by BenjaminDEMAILLE Loading…
Upgrade noise count estimation
#466 opened Aug 14, 2026 by sjfleming Member • Draft
1
h5ad support
#461 opened Aug 6, 2026 by pandey-ps Loading…
1
Vectorized mckp estimator
#459 opened Jul 31, 2026 by robf-srt Loading…
add faster implementations of Mean and MCKP estimators
#458 opened Jun 26, 2026 by caelen00000 Contributor Loading…
Add Apple Silicon (MPS) GPU support
#438 opened Feb 10, 2026 by mianaz Loading…
5 of 6 tasks
1
1
Fixed model checkpoint saving robustness and pandas deprecation warnings
#424 opened Aug 12, 2025 by sachha-naksha Loading…
1
use args.total_droplets to instantiate dataset
#391 opened Oct 23, 2024 by colobas Loading…
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