hmba_annotation_translator - #78

Merged

puja-trivedi merged 17 commits into

mainfrom

nelson_cell_taxonomy_translator

Nov 19, 2025

Commits on Aug 1, 2025

first draft of hmba_annotation_translator that takes nelson's annotation spreadsheet as input and aligns it with the bke_taxonomy schema
puja-trivedi
committed
2b0b7f9

Commits on Aug 6, 2025

Commits on Sep 15, 2025

added code that : writes objects in jsonld output format
puja-trivedi
committed
515d730

Commits on Sep 16, 2025

updated parsing of abbreviations. now primary_identifier and secondary_identifier will be set to the respective 'denotes_*' attribute depending on its 'type'
puja-trivedi
committed
b5c051d

Commits on Sep 18, 2025

fixed 'has_parent' assignment
puja-trivedi
committed
c400581
refactored and cleaned up code
puja-trivedi
committed
8405fad

Commits on Sep 26, 2025

added cli to taxonomy translator
puja-trivedi
committed
8aded3c

Commits on Sep 27, 2025

needed to reassign indices for parsing different taxon groups in the annotation.csv file. should update this in the future such that the indices are NOT hard coded.
puja-trivedi
committed
5fd5387

Commits on Oct 27, 2025