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Fixes #5.
Keep the original scaffold ownership hashes for user-edited files across init reruns. Refresh a hash only when creating or updating installer-owned content; merging registry entries preserves the user's ownership of existing edits.
Validation: all three new end-to-end removal regressions fail on the base revision and pass with the fix. The full suite passes 47 tests and the 15 release gates pass in an ordinary temporary clone. The release runner's fresh-install step reads committed HEAD; changed-source behavior is covered by the unit suite.