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io.yaml: reaction EC codes as cobra annotation ec-code
- #19
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Jun 8, 2026
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io.yaml: reaction EC codes as cobra annotation ec-code
#19
edkerk
merged 9 commits into
develop
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fix/yaml-eccode-annotation
SysBioChalmers/raven-toolbox:fix/yaml-eccode-annotation
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Commits on May 30, 2026
Add diff_models, annotation, and conditions modules for yeast-GEM port
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Add raven_python.biomass — sum / scale / rescale / set_gam
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Add raven_python.manipulation.find_duplicate_reactions (detection variant)
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Add raven_python.curation — batch_curate / batch_curate_from_tsv
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Commits on May 31, 2026
io.yaml: byte-compatible round-trip with cobrapy + RAVEN MATLAB
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conditions: switch from PyYAML to ruamel.yaml
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io.yaml: document the format + accept legacy geckoLight-in-metaData
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Commits on Jun 7, 2026
io.yaml: represent reaction EC codes as cobra annotation['ec-code']
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Commits on Jun 8, 2026
Merge remote-tracking branch 'origin/develop' into fix/yaml-eccode-annotation
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