Skip to content

Add PubTator3 to Omnicorp - #88

Draft
gaurav wants to merge 13 commits into
masterfrom
incorporate-pubtator3
Draft

Add PubTator3 to Omnicorp#88
gaurav wants to merge 13 commits into
masterfrom
incorporate-pubtator3

Conversation

@gaurav

@gaurav gaurav commented Jan 3, 2025

Copy link
Copy Markdown
Collaborator

PubTator3 makes all its annotations for all of PubMed publicly accessible at https://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator3/. This PR is intended to incorporate those annotations into Omnicorp. Because this will also require some amount of normalization, analysis and possible cleaning, this PR begins laying the groundwork for tooling intended to compare and benchmark annotations at scale.

WIP

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant