Issues

• Incorporate PubTator3 annotations into Omnicorp

  NCATS-Gamma/omnicorp#87 · Filter by author gaurav opened on Dec 31, 2024

• Figure out how to run Monarch's SciGraph locally

  NCATS-Gamma/omnicorp#86 · Filter by author gaurav opened on Dec 31, 2024

• Off-by-one error in robocord.job

  NCATS-Gamma/omnicorp#80 · Filter by author gaurav opened on Sep 17, 2020

• Figure out how to integrate OmniCORD into Omnicorp

  NCATS-Gamma/omnicorp#69 · Filter by author gaurav opened on May 18, 2020

• Rename RoboCORD to OmniCORD

  NCATS-Gamma/omnicorp#68 · Filter by author gaurav opened on May 18, 2020

• Replace Scala parallel collections with streams

  NCATS-Gamma/omnicorp#65 · Filter by author gaurav opened on Apr 21, 2020
  1

• Identify articles with multiple versions and only use the most recent version

  NCATS-Gamma/omnicorp#62 · Filter by author gaurav opened on Apr 6, 2020
  2

  

• Add support for optionally including broad and related synonyms

  NCATS-Gamma/omnicorp#59 · Filter by author gaurav opened on Apr 6, 2020

• Look into replacing SciGraph as our NER

  NCATS-Gamma/omnicorp#58 · Filter by author gaurav opened on Mar 29, 2020
  1

• Export RoboCORD annotations as TextAE so we can upload it to PubAnnotation

  NCATS-Gamma/omnicorp#57 · Filter by author gaurav opened on Mar 24, 2020
  1

• Improve gene name matching

  NCATS-Gamma/omnicorp#55 · Filter by author gaurav opened on Mar 23, 2020

• Add RDF export to RoboCORD

  NCATS-Gamma/omnicorp#52 · Filter by author gaurav opened on Mar 23, 2020

• Write out ranges of entities in the RoboCORD output

  NCATS-Gamma/omnicorp#51 · Filter by author gaurav opened on Mar 20, 2020

• Add prefixes to Turtle output

  NCATS-Gamma/omnicorp#48 · Filter by author gaurav opened on Mar 18, 2020
  

• Switch from HGNC to NCBIgene for gene IDs

  NCATS-Gamma/omnicorp#47 · Filter by author gaurav opened on Mar 4, 2020

• Replace Turtle comparison with Jena's isomorphic graph comparison

  NCATS-Gamma/omnicorp#39 · Filter by author gaurav opened on Feb 5, 2020

• Add tools for validating and verifying output files

  NCATS-Gamma/omnicorp#36 · Filter by author gaurav opened on Jan 23, 2020

• annotation false positive

  NCATS-Gamma/omnicorp#16 · Filter by author balhoff opened on Oct 25, 2019
  1

• Match Uberon adjectival forms

  NCATS-Gamma/omnicorp#11 · Filter by author balhoff opened on May 3, 2019

• Add Meddra

  NCATS-Gamma/omnicorp#9 · Filter by author balhoff opened on Apr 5, 2019

• Store calculated information content scores for ontology terms

  NCATS-Gamma/omnicorp#5 · Filter by author balhoff opened on Mar 9, 2019
  1

• Load ontologies into triplestore

  NCATS-Gamma/omnicorp#3 · Filter by author balhoff opened on Feb 13, 2019

• automate build

  NCATS-Gamma/omnicorp#2 · Filter by author balhoff opened on Feb 12, 2019
  2

• Evaluate Noble Coder

  NCATS-Gamma/omnicorp#1 · Filter by author balhoff opened on Feb 6, 2019