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Description of pixie rmq #57

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1a1e861
Description of pixie rmq
Malkovsky Jul 2, 2026
bc68765
fixes
Malkovsky Jul 2, 2026
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4 changes: 4 additions & 0 deletions CMakePresets.json
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Original file line number Diff line number Diff line change
Expand Up @@ -116,6 +116,7 @@
"rmq_tests",
"test_rmm",
"louds_tree_tests",
"wavelet_tree_tests",
"bp_tree_tests",
"dfuds_tree_tests",
"excess_positions_tests"
Expand All @@ -131,6 +132,7 @@
"rmq_tests",
"test_rmm",
"louds_tree_tests",
"wavelet_tree_tests",
"bp_tree_tests",
"dfuds_tree_tests",
"excess_positions_tests"
Expand Down Expand Up @@ -200,6 +202,7 @@
"rmq_tests",
"test_rmm",
"louds_tree_tests",
"wavelet_tree_tests",
"bp_tree_tests",
"dfuds_tree_tests",
"excess_positions_tests"
Expand All @@ -215,6 +218,7 @@
"rmq_tests",
"test_rmm",
"louds_tree_tests",
"wavelet_tree_tests",
"bp_tree_tests",
"dfuds_tree_tests",
"excess_positions_tests"
Expand Down
1 change: 1 addition & 0 deletions academic/.gitignore
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Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
/.quarto/
/_extensions/

@chatgpt-codex-connector chatgpt-codex-connector Bot Jul 3, 2026

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P2 Badge Restore the tracked ACM Quarto extension

With this ignore entry, the commit also removes the tracked academic/_extensions/quarto-journals/acm tree, but the existing paper projects still have _extensions -> ../../_extensions symlinks and use format: acm-pdf (for example academic/papers/algorithms_for_excess/paper.qmd:38). In a fresh checkout those symlinks are broken, so rendering the ACM papers can no longer resolve the required Quarto extension; keep the extension tracked or stop pointing the papers at it.

Useful? React with 👍 / 👎.

**/*.quarto_ipynb
26 changes: 12 additions & 14 deletions academic/AGENTS.md
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Expand Up @@ -10,8 +10,6 @@ Materials are authored in [Quarto](https://quarto.org) for rich rendering (math,

```
academic/
├── _quarto.yml # Book project (reports, presentations, notes)
├── index.qmd # Project landing page
├── _extensions/ # Shared Quarto extensions (ACM journal format)
│ └── quarto-journals/acm/ # ACM acm-pdf extension
├── papers/ # Research papers (standalone Quarto projects)
Expand All @@ -30,14 +28,14 @@ academic/

## Architecture

### Two Quarto Project Types
Academic materials are standalone documents or standalone Quarto projects.
There is intentionally no root `academic/_quarto.yml` book project and no global
academic landing page. Render each note, report, presentation, or paper from its
own directory. The shared bibliography lives at `academic/bibliography/references.bib`.

The `academic/` directory contains **two kinds** of Quarto projects:

1. **Book project** (`academic/_quarto.yml`, `type: book`): Covers reports, presentations, and notes. Rendered from the `academic/` root.
2. **Standalone paper projects** (`papers/<name>/_quarto.yml`, `type: default`): Each paper is its own Quarto project. Rendered from the paper's directory.

Papers are standalone because Quarto book projects cannot resolve journal extensions (like `quarto-journals/acm`). Each paper directory has its own `_quarto.yml` and symlinks `_extensions/` to the shared extensions at `academic/_extensions/`.
Each paper directory has its own `_quarto.yml` and may symlink `_extensions/` to
the shared extension directory at `academic/_extensions/` when it needs the ACM
format.

### ACM Extension

Expand Down Expand Up @@ -69,12 +67,12 @@ quarto render # Produces paper.pdf + paper.tex
quarto preview # Live preview with reload
```

### Book (reports, presentations, notes)
### Notes, Reports, and Presentations

```bash
cd academic/
quarto render # Produces _book/ directory
quarto preview # Live preview
cd notes/rmq/
quarto render index.qmd --to pdf
quarto preview index.qmd
```

## Conventions
Expand Down Expand Up @@ -130,5 +128,5 @@ The following works are foundational to Pixie's design:
- Use `@AuthorYear` citation syntax in `.qmd` files
- LaTeX code blocks should use `{cpp}` or `{latex}` language tags
- Do not commit large binary files (>10MB) without explicit approval; consider using Git LFS
- Render papers from their own directory, NOT from the `academic/` book project root
- Render each material from its own directory, not from the `academic/` root
- Do NOT put `@` symbols in BibTeX comments — BibTeX tries to parse them as entries
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