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KarchinLab
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TCRtoolkit
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Merge from main
- #66
#66
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dltamayo
merged 23 commits into
dltamayo-dev
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Dec 17, 2025
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#66
dltamayo
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Commits on Oct 21, 2025
Add sample test fixtures for first two steps of the pipeline.
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Initial set of unit tests
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Add ignore rules for nf-test and actual output directories.
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Differentiate between unit tests and integration tests. Unit tests must
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Commits on Oct 23, 2025
Don't need to test Post values since the file structure is the same.
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Update upload-artifact to v4
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Publish test results as xml html instead
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Remove publishing the test result artifacts from the full
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Update docker image link
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Commits on Nov 6, 2025
Merge pull request #62 from KarchinLab/fix/readme-docker-image-host-ghcr
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Update .github/workflows/nextflow-test.yaml
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Commits on Nov 7, 2025
Update tests/modules/local/airr_convert/convert_adaptive.nf.test
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Commits on Nov 10, 2025
Merge pull request #61 from KarchinLab/feature/add-unit-test-scaffolding
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Commits on Nov 12, 2025
Nextflow not NextFlow
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TCRtoolkit not TCRtoolkit-Bulk
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No need to clone the repository
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Commits on Nov 18, 2025
Merge pull request #64 from ewels/main
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Commits on Nov 19, 2025
Add rpy2 version 3.6.4 to environment
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Commits on Nov 20, 2025
Merge pull request #65 from KarchinLab/KevinMLanderos-patch-1
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Commits on Nov 21, 2025
Add r-seurat and r-seuratobject to env.yml
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Fix formatting of r-seuratobject entry in env.yml
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Commits on Nov 25, 2025
Change references of previous TCr bulk approach and highlight we suuport single-cell pseudobulk
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Commits on Dec 4, 2025
Merge pull request #60 from KarchinLab/dltamayo-dev
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