Merge from main - #66
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Samplesheet validation and AIRR conversion.
pass before integration test runs.
minimal-example pipeline run. Artifact too large
Update docker image link
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Feature/add unit test scaffolding
Minor tweaks to the readme
Add rpy2 version 3.6.4 to environment. Package needed to read Seurat Object (RDS) and extract phenotype info and do pseudobulking by phenotype
Packages seurat and seuratobject needed to read seurat object
…ort single-cell pseudobulk
Reformat sample_calc
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