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Merged
igunduz merged 1 commit into from
Aug 21, 2026
Merged

Add r-universe workflow #27

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13 changes: 13 additions & 0 deletions .github/workflows/r-universe.yml
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name: Test R-universe

on:
push:
pull_request:

jobs:
build:
name: R-universe testing
uses: r-universe-org/workflows/.github/workflows/build.yml@v3
with:
universe: bioc
organization: bioconductor # for BiocCheck checks
8 changes: 1 addition & 7 deletions README.Rmd
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Expand Up @@ -12,17 +12,11 @@ knitr::opts_chunk$set(
# *methylTFR* : Quantification of DNA Methylation Patterns in TFBS

<!-- badges: start -->
[![Test R-universe](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/r-universe-test.yml/badge.svg)](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/r-universe.yml)
[![R-CMD-check-bioc](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/check-bioc.yml/badge.svg)](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/check-bioc.yml)
[![R-CMD-check](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/R-CMD-check.yaml)
[![GitHub issues](https://img.shields.io/github/issues/EpigenomeInformatics/methylTFR)](https://github.com/EpigenomeInformatics/methylTFR/issues)
[![GitHub pulls](https://img.shields.io/github/issues-pr/EpigenomeInformatics/methylTFR)](https://github.com/EpigenomeInformatics/methylTFR/pulls)
[![Bioc release status](http://www.bioconductor.org/shields/build/release/bioc/methylTFR.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/methylTFR)
[![Bioc devel status](http://www.bioconductor.org/shields/build/devel/bioc/methylTFR.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/methylTFR)
[![Bioc downloads rank](https://bioconductor.org/shields/downloads/release/methylTFR.svg)](http://bioconductor.org/packages/stats/bioc/methylTFR/)
[![Bioc support](https://bioconductor.org/shields/posts/methylTFR.svg)](https://support.bioconductor.org/tag/methylTFR)
[![Bioc history](https://bioconductor.org/shields/years-in-bioc/methylTFR.svg)](https://bioconductor.org/packages/release/bioc/html/methylTFR.html#since)
[![Bioc last commit](https://bioconductor.org/shields/lastcommit/devel/bioc/methylTFR.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/methylTFR/)
[![Bioc dependencies](https://bioconductor.org/shields/dependencies/release/methylTFR.svg)](https://bioconductor.org/packages/release/bioc/html/methylTFR.html#since)
<!-- badges: end -->

`methylTFR` is an R-package to analyze DNA methylation signatures in transcription factor binding sites in each individual cells or samples.
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3 changes: 1 addition & 2 deletions README.md
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<!-- README.md is generated from README.Rmd. Please edit that file -->



# *methylTFR* : Quantification of DNA Methylation Patterns in TFBS

<!-- badges: start -->
[![Test R-universe](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/r-universe-test.yml/badge.svg)](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/r-universe.yml)
[![R-CMD-check-bioc](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/check-bioc.yml/badge.svg)](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/check-bioc.yml)
[![R-CMD-check](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/EpigenomeInformatics/methylTFR/actions/workflows/R-CMD-check.yaml)
[![GitHub issues](https://img.shields.io/github/issues/EpigenomeInformatics/methylTFR)](https://github.com/EpigenomeInformatics/methylTFR/issues)
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