PhD candidate in computational biology at Saarland University, in the Integrative Cellular Biology and Bioinformatics group. I work on how cells establish and change their identity, using single-cell and bulk multi-omics data, including chromatin accessibility, DNA methylation, and transcriptomics, and machine learning that remains interpretable enough to argue with.
Most of what I build ends up as software other people run: three R packages, one Python package, and the reproducible workflows around them. I care about the part after the analysis works, when someone else has to use it without me sitting next to them.
Currently, I am finishing my thesis, developing ARTEMIS, and looking for what comes next.
| Package | Version | Role | BioC-release | Info |
|---|---|---|---|---|
| deconvR |  |
Developer/Maintainer |  |
Simulation and Deconvolution of Omic Profiles |
| methylTFR |  |
Developer/Maintainer |  |
Quantification of DNA Methylation Patterns in TFBS |
| methylTFRAnnotationHg38 |  |
Developer/Maintainer | – | AnnotationHub data package for methylTFR on hg38 |
| methylTFRAnnotationMm10 | |
Developer/Maintainer | – | AnnotationHub data package for methylTFR on mm10 |
| ChrAccR |  |
Contributor/Co-developer | – | R package for comprehensive analysis of bulk and single-cell chromatin accessibility data |
| ARTEMIS | |
Developer/Maintainer | – | Python package for Attention-based Regulatory Transcription Factor Explanation from Methylation Interaction Signatures |