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[BUG]

bugSomething isn't workingSomething isn't working

Status: Open.

#193 In ClearAnatomics/ClearMap;

· bsatterw opened on Jul 14, 2026

[BUG] GUI stitching fails for Blaze datasets (KeyError: 'Z' in Preview, ValueError: Z not in tile_axes=['X','Y'] in Run Stitching)

bugSomething isn't workingSomething isn't working

Status: Open.

#192 In ClearAnatomics/ClearMap;

· RedTabby01 opened on Jul 6, 2026

[BUG] Software crashes when I click on "View Atlas"

bugSomething isn't workingSomething isn't working

Status: Open.

#191 In ClearAnatomics/ClearMap;

· bsatterw opened on Jun 11, 2026

How do I enable checkpointing or resume execution for the stitch_layout step?

Status: Open.

#188 In ClearAnatomics/ClearMap;

· liu-wq opened on Dec 25, 2025

Stats calculations not running on the GUI

Status: Open.

#185 In ClearAnatomics/ClearMap;

· microscopycore-ismms opened on Oct 21, 2025

Getting ValueError: Incompatible shapes (266, 395, 164) != (44, 65, 82) for the source Tif-Source(44, 65, 82)

Status: Open.

#182 In ClearAnatomics/ClearMap;

· michaelmell opened on Sep 11, 2025

[BUG] Cannot Create a ClearMap environment

bugSomething isn't workingSomething isn't working

Status: Open.

#179 In ClearAnatomics/ClearMap;

· garretttan23 opened on Jun 4, 2025

Using ClearMap on previously stitched images

Status: Open.

#170 In ClearAnatomics/ClearMap;

· alexjanis opened on Apr 3, 2025

Confusing Documents of Wobbly Stitcher

Status: Open.

#169 In ClearAnatomics/ClearMap;

· Chrisa142857 opened on Mar 30, 2025

How to install in windows system

Status: Open.

#167 In ClearAnatomics/ClearMap;

· LaylaQAQ opened on Mar 25, 2025

Obtaining Information on Stitching from .lyt files

Status: Open.

#166 In ClearAnatomics/ClearMap;

· Tas-V opened on Mar 24, 2025

could not connect to display

Status: Open.

#160 In ClearAnatomics/ClearMap;

· GimenaA opened on Feb 27, 2025