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Initial commit for including mouse essential gene param#75

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wong-nw wants to merge 5 commits into
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iss74_mouseCEG
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Initial commit for including mouse essential gene param#75
wong-nw wants to merge 5 commits into
mainfrom
iss74_mouseCEG

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@wong-nw

@wong-nw wong-nw commented May 14, 2026

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Changes

Used VSCode Copilot to guide the introduction of a species parameter to switch the essential genes files used for BAGEL dependent on mouse or human data.

Issues

Solves #74

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • [ ] Write unit tests for any new features, bug fixes, or other code changes. testing framework not yet implemented
  • [ ] Update docs if there are any API changes. on hold until before public release
  • If a new nextflow process is implemented, define the process container and stub.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

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