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Include parameter for mageck to include list for control sgRNAs or control genes

bugSomething isn't workingSomething isn't working

Status: Open.

#79 In CCBR/CRISPIN;

· wong-nw opened on May 28, 2026

Update documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In CCBR/CRISPIN;

· wong-nw opened on May 27, 2026

Test suite expansion

enhancementNew feature or requestNew feature or request

Status: Open.

#76 In CCBR/CRISPIN;

· wong-nw opened on May 14, 2026

Add flag for mouse or human data as required for BAGEL and DrugZ essential genes list

bugSomething isn't workingSomething isn't working

Status: Open.

#74 In CCBR/CRISPIN;

· wong-nw opened on May 12, 2026

update for nextflow v2 parser strict syntax

Status: Open.

#72 In CCBR/CRISPIN;

· kelly-sovacool opened on May 12, 2026

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2026-06

Missing CEG and NEG references: Mouse

bugSomething isn't workingSomething isn't working

Status: Open.

#53 In CCBR/CRISPIN;

· wong-nw opened on Nov 15, 2024

exp_name for all outputs

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In CCBR/CRISPIN;

· wong-nw opened on Nov 13, 2024

document basic pipeline usage

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#42 In CCBR/CRISPIN;

· kelly-sovacool opened on May 3, 2024

Refactor samplesheet based on CHAMPAGNE

enhancementNew feature or requestNew feature or request

LowPriority

Status: Open.

#41 In CCBR/CRISPIN;

· kelly-sovacool opened on May 3, 2024

Pipeline restarts even with resume flag at check_samplesheet

bugSomething isn't workingSomething isn't working

Status: Open.

#37 In CCBR/CRISPIN;

· slsevilla opened on Nov 21, 2023

add VISPR to the pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In CCBR/CRISPIN;

· slsevilla opened on Nov 21, 2023

Update libraries to follow the sgRNA ID, the sequence, the gene

bugSomething isn't workingSomething isn't working

Status: Open.

#35 In CCBR/CRISPIN;

· slsevilla opened on Nov 20, 2023