David/miRBind cnn optimization - #7

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david/miRBind_CNN_optimization

Commits on Oct 15, 2024

Sync with main
evaklimentova
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7eb1cef
miRBind CNN cleanup
evaklimentova
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e92e058

Commits on Oct 22, 2024

adding pipeline for running miRBin CNN training
evaklimentova
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63f0558
optimization notebook as tutorial
evaklimentova
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410cf03

Commits on Feb 24, 2025

Tmp commit, completition of miRBind CNN retraining and optimisation
davidcechak
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2fdcc3d
Add .gitignore
davidcechak
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094359b
Encode data for mirbind memory mapping dataset
davidcechak
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cf62cce
Use optuna to optimise hyperparamters of miRBind model
davidcechak
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3a018ad
Clean up logs which should not be in git
davidcechak
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c4bafe4
Evaluate a trained model on test datasets
davidcechak
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f9299c1
Train a model with custom hyperparameters
davidcechak
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f7d0f92
Run the full hyperparameter optimisation pipeline for miRBind
davidcechak
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05f36df
Fix model log output paths
davidcechak
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ffff74c
Model training: Add error handling
davidcechak
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4f9bd9c
miRBind: extract model compilation to utils
davidcechak
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ebfc315

Commits on Mar 6, 2025

miRBind model: remove pycache file
davidcechak
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73fb66a
miRBind training and evaluation: refactore logging, clean bash files
davidcechak
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ad84af1

Commits on Mar 10, 2025

train miRBind with original params: clean bash scripts
davidcechak
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8665929
miRBind optuna optimisation: add readme
davidcechak
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a475694

Commits on Apr 10, 2025

miRBind merge review: move generic scripts to code/machine_learning/
davidcechak
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b6dddc4