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BioGeMT / FuNmiRBench Public

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Predictors cleanup - #121

#121

Open

stephaniesamm wants to merge 14 commits into

mainBioGeMT/FuNmiRBench:mainfrom

predictors_cleanupBioGeMT/FuNmiRBench:predictors_cleanupCopy head branch name to clipboard

Conversation Commits14 (14)Checks Files changed

Open

Predictors cleanup#121
stephaniesamm wants to merge 14 commits into
mainfrom
predictors_cleanup

Commits

Commits on Jul 23, 2026

Directing all logging to gitignored data/predictions/<predictor>/, except TS.
stephaniesamm
committed
Refactor TS pipeline for standardized output paths and logging; updated README.
stephaniesamm
committed
Refactor resource paths in miRDB miRTarget pipeline.
stephaniesamm
committed
Refactor: centralise shared predictor resources.
stephaniesamm
committed
Refactor: flatten predictor-specific caches.
stephaniesamm
committed
Docs: explain shared resource cache.
stephaniesamm
committed

Commits on Jul 27, 2026

Refactor: harmonize predictor pipeline CLI.
stephaniesamm
committed
Update gitignore; reran all predictor pipelines.
stephaniesamm
committed

Commits on Jul 28, 2026

Updated gitignore.
stephaniesamm
committed
Removed absolute paths from tracking.
stephaniesamm
committed
Harmonize logging for targetscan.
stephaniesamm
committed

Commits on Jul 29, 2026

mirbind2 scores: lower is stronger.
stephaniesamm
committed
Updated Zenodo DOI to new version. Updated mirna expt info TSV.
stephaniesamm
committed
Updated TSV: swapped GSE179399 for GSE118315.
stephaniesamm
committed

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