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Figure out the train set

Status: Open.

#122 In BioGeMT/FuNmiRBench;

· stephaniesamm opened on Jul 30, 2026

Document GEO download and RNA-seq ingestion pipelines in READMEs

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#119 In BioGeMT/FuNmiRBench;

· sgiannouk opened on Jul 27, 2026

Rerun predictors

Status: Open.

#115 In BioGeMT/FuNmiRBench;

· stephaniesamm opened on Jul 21, 2026

Comparison of IGS vs non-IGS genes

Status: Open.

#108 In BioGeMT/FuNmiRBench;

· palexiou opened on Jul 8, 2026

Produce Venn (?) Diagram / Intersection Numbers

Status: Open.

#107 In BioGeMT/FuNmiRBench;

· palexiou opened on Jul 8, 2026

Produce Intersection Gene Set (IGS)

Status: Open.

#106 In BioGeMT/FuNmiRBench;

· palexiou opened on Jul 8, 2026

Coverage Metrics Analysis (Fig. 2)

Status: Open.

#105 In BioGeMT/FuNmiRBench;

· palexiou opened on Jul 8, 2026

Merge RNA-Seq pipeline with GEO-Download

Status: Open.

#93 In BioGeMT/FuNmiRBench;

· sgiannouk opened on May 19, 2026

Review Reports

Status: Open.

#86 In BioGeMT/FuNmiRBench;

· sgiannouk opened on Apr 28, 2026

Quick start of main README.md should include the main use first

Status: Open.

#74 In BioGeMT/FuNmiRBench;

· zacharopoulou opened on Mar 30, 2026

Deploy online

Status: Open.

#54 In BioGeMT/FuNmiRBench;

· palexiou opened on Mar 3, 2026

build_predictions.py should parse predictors from Zenodo

Status: Open.

#52 In BioGeMT/FuNmiRBench;

· zacharopoulou opened on Mar 3, 2026