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AllenInstitute
OCS-Submission-Capsule-API
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feat(cli): allow audit and force submission in backlog runs
CI
#56:
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fix(cli): use fastq names for backlog submission commands
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#55:
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fix(ocs): remind users to check load names when metadata is missing
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#54:
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fix(cli): require --modality for every input source
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fix(cli): reject mixed batch and backlog inputs
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docs(readme): document load-name submissions and just commands
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chore(release): prepare v0.1.5
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fix(loads): check status using the modality FASTQ
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fix(manifest): use MTX FASTQ for multiome loads
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fix(config): add Cell Ranger BAM option for GEMX
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fix(config): align OCS workflow settings
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refactor: simplify batch input name handling
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fix: add organism reference aliases
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fix: correct broken JSONC quote, rename RFX post-align config to Cell…
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fix: log load names for load submissions
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feat: update workflow asset configuration
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#41:
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test: use reported FASTQs for load grouping
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fix: submit load-name jobs once per eligible load
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fix: restore singular OCS FASTQ flag
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fix: use plural fastq names flag
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feat: support load name inputs
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#36:
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fix: accept organism common name export header
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feat: tolerate variations in exporter headers
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refactor: rename core package to workflow
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chore(release): consolidate release as v0.1.4
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