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Unable to run TissueLab demo — “Run” button and model import both greyed out #8

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Unable to run TissueLab demo — “Run” button and model import both greyed out#8

Description

@GreenValue
GreenValue
opened on Nov 10, 2025

First of all

I feel very lucky to have the opportunity to explore TissueLab, and I really appreciate your great work and your detailed explanations.

Issue description

I cannot run the demo in TissueLab.

Here are the detailed symptoms:

  1. After generating a workflow,
    the Run button is greyed out and cannot be clicked.
Image
  1. When trying to Import Existing Model,
    the model list is also greyed out. Even after selecting a model and clicking “OK,”
    nothing happens in the interface.
Image
  1. As a result, I cannot start any workflow run.
Image

My questions

  • Where can I download or load the required models?
  • How can I make the workflow run properly for the demo?

Environment

  • OS: Windows 10
  • Installed via: TissueLab-Setup-1.0.2.exe

Thank you so much for your time and help!

Activity

  1. huangzhii commented on Nov 10, 2025

    @huangzhii
    huangzhii
    on Nov 10, 2025
    Contributor

    Thanks for using TissueLab! Could you please try downloading the associated task nodes first? You can also check out this video tutorial: https://www.youtube.com/watch?v=P1_HW4isWI4 (also available in our homepage tissuelab.org)

    Moving forward, we’ll continue improving the tutorial to make it easier for everyone to follow. We apologize for any confusion in this early version.

    Zhi

  2. GreenValue commented on Nov 11, 2025

    @GreenValue
    GreenValue
    on Nov 11, 2025
    Author

    Thank you very much for your guidance.
    I believe the first step should be to download the node tasks, right?
    However, I haven’t been able to download them — neither from the TissueLab interface nor from GitHub.

    Image Image

    Is there any other way to get them?

  3. huangzhii commented on Nov 11, 2025

    @huangzhii
    huangzhii
    on Nov 11, 2025
    Contributor

    You can try downloading with VPN since we host those models via Google Cloud. Alternatively, you can download and configure models manually with https://github.com/zhihuanglab/Tissuelab-Model-Zoo

  4. huangzhii commented on Nov 11, 2025

    @huangzhii
    huangzhii
    on Nov 11, 2025
    Contributor

    For Github repo, please consider clone the repo rather than download the zip file. Check out this tutorial for more information: https://docs.github.com/en/repositories/creating-and-managing-repositories/cloning-a-repository

  5. GreenValue commented on Nov 11, 2025

    @GreenValue
    GreenValue
    on Nov 11, 2025
    Author

    I tried using a VPN and ran git clone to download the latest code, but it still failed. The log is as follows:

    $ git clone --depth 1 https://github.com/zhihuanglab/Tissuelab-Model-Zoo "K:\doctor\tissue_lab\Src\Tissuelab-Model-Zoo-1"
Cloning into 'K:\doctor\tissue_lab\Src\Tissuelab-Model-Zoo-1'...
remote: Enumerating objects: 1175, done.
remote: Counting objects: 100% (1175/1175), done.
remote: Compressing objects: 100% (987/987), done.
error: RPC failed; curl 56 Recv failure: Connection was reset
error: 4062 bytes of body are still expected
fetch-pack: unexpected disconnect while reading sideband packet
fatal: early EOF
fatal: fetch-pack: invalid index-pack output

    As a personal suggestion, would it be possible to upload the model to Baidu Netdisk for easier sharing?

    It would be such a pity if such an innovative product cannot be used simply because the models cannot be downloaded. Let's work together to remove this obstacle.

  6. GreenValue commented on Nov 11, 2025

    @GreenValue
    GreenValue
    on Nov 11, 2025
    Author

    Thanks for using TissueLab! Could you please try downloading the associated task nodes first? You can also check out this video tutorial: https://www.youtube.com/watch?v=P1_HW4isWI4 (also available in our homepage tissuelab.org)

    Moving forward, we’ll continue improving the tutorial to make it easier for everyone to follow. We apologize for any confusion in this early version.

    Zhi

    About 3 hours ago, I tried downloading the compressed package using a VPN. I was able to download a small part of it and imported it. Is this correct?
    Image

    Image

  7. GreenValue commented on Nov 11, 2025

    @GreenValue
    GreenValue
    on Nov 11, 2025
    Author

    Could it be that Tissuelab-Model-Zoo is too large to be downloaded directly?
    I guess the Tissuelab-Model-Zoo repository might be several gigabytes in size, right?

  8. GreenValue commented on Nov 12, 2025

    @GreenValue
    GreenValue
    on Nov 12, 2025
    Author
    Image

    I tried downloading the model repository manually via VPN (it took around 12 hours).
    Download command used:

    git clone --depth=1 https://githubproxy.cc/https://github.com/zhihuanglab/Tissuelab-Model-Zoo.git

    Git status after download:

    
PS K:\doctor\tissue_lab\Src\Tissuelab-Model-Zoo1111_1833\Tissuelab-Model-Zoo> git pull
Already up to date.
PS K:\doctor\tissue_lab\Src\Tissuelab-Model-Zoo1111_1833\Tissuelab-Model-Zoo> git status
On branch main
Your branch is up to date with 'origin/main'.

nothing to commit, working tree clean

    I’m not sure if the download is complete or whether I need to configure model paths manually.
    Next， I just try to run!

  9. GreenValue
    closed this as completedon Nov 13, 2025
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