This repository was archived by the owner on Feb 8, 2025. It is now read-only.
[ENH] Seeding on the white matter-gray mattter interface#1096
Open
36000 wants to merge 1 commit into
Open
Conversation
Collaborator
Author
|
Should consider trying this instead: #418 |
Collaborator
Author
|
Or use #1129 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Here is a first attempt at seeding in the gray matter white matter interface using hidden Markov Random Field models (as implemented in DIPY) on slightly modified anisotropic power maps (no T1 needed). I also set this as the default seeding to see which tests it would throw
Screen.Recording.2024-01-27.at.11.38.56.AM.mov
There are some other minor bug fixes in here:
Fix IFOF color scheme
Throw warning and exit in
apply_cmd_to_afq_derivsif you are trying to clobber() a directory that doesnt exist yet