Ripples server integration with namespace changes - #429

Merged

yatisht merged 30 commits into

yatisht:masterfrom

pgangwar-ucsd:ripples-server-tbb-update

Apr 29, 2026

Commits on Nov 17, 2025

ripples-fast updated to latest tbb from usher master branch
mrkylesmith
committed
f1a2a6f
fix usher-sampled-server build error, remove old tbb scheduler calls, and link against TBB::tbbmalloc in previous commit for usher-server binaries using scalable allocator C interface
mrkylesmith
committed
a8676e7

Commits on Jan 20, 2026

Commits on Feb 13, 2026

more matoptimize MAT namespace wrapping
mrkylesmith
committed
f353d7f

Commits on Feb 14, 2026

Commits on Feb 17, 2026

matproxy copy cleanup, and more namespace/build error fixes
mrkylesmith
committed
e4b4efb

Commits on Feb 18, 2026

Commits on Feb 24, 2026

moved mat tree proxy to ripples util, updated mat copy and bug fixes in conversion
mrkylesmith
committed
f553e93

Commits on Feb 27, 2026

Making mat copy faster
pgangwar-ucsd
committed
f14bc4b

Commits on Mar 4, 2026

Adding option to enable ripples in the server and removing preallocated_nodes from muat data structure
pgangwar-ucsd
committed
e357dd7

Commits on Mar 19, 2026

additional MAT constructors for tree copy
mrkylesmith
committed
7e822c2

Commits on Mar 20, 2026

Commits on Mar 22, 2026

Merge branch 'master' into ripples-server-tbb-update
pgangwar-ucsd
authored
f1d6522

Commits on Mar 23, 2026

Adding ripples arguments as command line options
pgangwar-ucsd
committed
452c77b

Commits on Mar 24, 2026

adding status error codes to ripples server return
mrkylesmith
committed
d5966ad
also copy node clade annotations
mrkylesmith
committed
b7a3247

Commits on Mar 29, 2026

update includes for greater modularity between ripples runner and server
mrkylesmith
committed
1b40a6f

Commits on Mar 31, 2026

write ripples server error messages to server child_proc file handle
mrkylesmith
committed
ad67265

Commits on Apr 7, 2026

Commits on Apr 20, 2026

ripples server: init post-filtration pipeline, aggregate info on candidate recombinants
mrkylesmith
committed
59fd632

Commits on Apr 22, 2026

ripples server: move header writter to beginning of recombinant candidate writer
mrkylesmith
committed
036d8e9

Commits on Apr 28, 2026

apply patch for accessing newly placed nodes after using usher_common
mrkylesmith
committed
a32261c