Integrate dynophore generation and visualization - #51

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dominiquesydow wants to merge 20 commits into

Commits on Nov 9, 2021

Add download function to utils
dominiquesydow
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8875f58
Update CLI: combine generation and visualization
dominiquesydow
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af1447b
Add dynophore globals (incl. dynophore URL)
dominiquesydow
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80e525a
Add openjdk to env
dominiquesydow
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8f51e62
Ignore JAR files (git)
dominiquesydow
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d0ef04b
Replace wget with urllib
dominiquesydow
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9591d63
Remove unused imports
dominiquesydow
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31c458d
Add API tests (WIP)
dominiquesydow
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7c3bf8a
Update CLI tests (WIP)
dominiquesydow
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21f0fa6
Update docs (WIP)
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72cb95f

Commits on Nov 10, 2021

Extend docs (getting started) with IO details
dominiquesydow
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faace71
If generation erroneous, skip visualization!
dominiquesydow
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284e0af
Fix some typos in docs
dominiquesydow
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9f96d0b
Change logging level to debug
dominiquesydow
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e328c14
Remove TODOs or change to FIXMEs
dominiquesydow
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3d4cc0e
Add CLI unit tests (passing locally)
dominiquesydow
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c8580a5
Usage options as bullet points not as enumerated list
dominiquesydow
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51fe61e
Update tests (passing locally)
dominiquesydow
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2450277
Rerun notebooks without calling the NGL GUI (removes rendering issues)
dominiquesydow
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254fb7f
Edit docs text
dominiquesydow
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01ca235