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1. HelperBunny HelperBunny Public

   An array-based framework for comparative sequence analysis.

   Python 3

2. holozoan_tk_evolution holozoan_tk_evolution Public

   Reproducible computational notebooks for the analyses described in "Evolution of the Holozoan Tyrosine Kinome"

   Jupyter Notebook 1

3. kibby kibby Public

   A fast, alignment-free method for estimating sequence conservation using protein sequence embedding

   Python 2

4. phosformer phosformer Public

   An interpretable Transformer model for kinase-specific phosphosite prediction

   Python 1 3

5. chumby chumby Public

   A package for making tree-based visualizations for embedding vectors

   Jupyter Notebook 3